Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923895.1_cds_XP_016472375.1_64617
CDS Infomation

[gene=LOC107794404] [db_xref=GeneID:107794404] [protein=protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like isoform X2] [protein_id=XP_016472375.1] [location=join(36187..36237,36488..37165,37468..37580,38428..38687,39079..39200,41246..41314,41723..41776,41928..42029,43289..43384)] [gbkey=CDS]
Sequence

ATGGTCTCTACTGATGGATTTGTTCCTAGCTTTTGCTGCCCATATCGGAAGACATTTTTT
ACAGGTACTATCCCTGTTTCAGTATGGCAGTTCAAGCTTGTCTCCAGCAGTCCATTCCAA
AAGGCTCATTTAGCTCCTTGTATTAAGTGTGAGAATAAAGAAAAGGATCAGGGCTCTCAG
GGTTCCTTTGAGCAGGTTTCTGTTGAGCGTTACCCTTATCACAGTTATATGGACTCCACT
TCTGGGCAGCTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGCAGGAGTACTGG
CCAGAAGGCACAGCCAGTCGAGTTCGAGCAGCCAGGGCTCCTGAACCCACTGGTACTTCA
ACTGGAACCCCATCTTATGGAAAAAACCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCT
GCTGCTGCTTCCAAGACTTCGGACGTAAATATAATTTCTGATGATCCTACGGAGAGTCCA
GATAATTTACCAGAAGAGCCAAAGGATCTTTCTTCGGAGTATGTCATTTATCAGCCTGAA
CAAGAAGAAGAGGAGCTGACAGGCTATGAGCTGGATAAAAGACTTGGAAAGCCCCACCCT
TTTATTGATCCGAAGACAAAGAAGGAAATAGAGAAGCCACTTACTAGTGAAGAACTATGG
TGGAATTGGAGAAAGCCTGAAAAAGAGCAATGGTCTAGGTGGCAGAGGCGGCGTCCTGAT
GTTGAAACGGTGTTTCTTAAAGCTATGGCGGAGACAGGACAGGTAAAGCTTTATGGTGAC
CATCCTACTTTGACAGAGACTGCACTCTATAGAGCAAGGAGACATCTATATAAGGCGGAA
AGGCTACAGGCTGAAAAAGAGAAAATGGAAAAGATTGGCCCTATTGCATACTACTCAGAG
TGGGTCCAAGCTTGGAAGAAAGACACTTCACGAGAAGCCATTCAAAAGCATTTTGAAGAG
ACTGGTGAAGATGAGAACATTCAACTCATCGAAATGTTCTGCCATCAAACAGATCGTGAA
TACCGCATAATGATGGGAACTGATATCCGTATTCCTCGTGATCCTCTGGCCATGAGAATG
CGGGAGGATCAAATAAAACAAATTTGGGGTGGAGATCCAGTTTATCCAACCATTAATTAC
ATTCAGGATCCAGATGAAGTGATTGATTACAGGGGTCCAGACTTCCATGAACCAACACCA
AATATGTTGGCCTATCTGAAAGAGCATGGCAAAATAATATCAAGAGAGGAGTTAGAGAAA
ATTCTGGCCAAAGAGAAGACAGAAGAAATTGAGGTGGCGGAAATTGATGAAGCCATGGCA
CGAGCTGTTGACATTGGTGAAAATGATGACGAAGAAGAAGGAAGTGATGCTGAAGTTGAA
GAGGGAGATGAGAAAATTACACGAAATTGGAGTGTTTTGAAAAGTAATCCAGAGCTTCGC
AAATCGAAGGATAAACCCAAAAAGAAAGACATGTCTCTGGAAGAAGCTGTAGATGATTCT
GAGAATTTAACGGACTTCCTCATGGACTTTGATGAGGATGAGTGA

Peptide Sequence

PEP ID

XP_016472375.1
PEP Infomation

PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like isoform X2 [Nicotiana tabacum]
Sequence

MVSTDGFVPSFCCPYRKTFFTGTIPVSVWQFKLVSSSPFQKAHLAPCIKCENKEKDQGSQ
GSFEQVSVERYPYHSYMDSTSGQLEPASGARASIPGQEYWPEGTASRVRAARAPEPTGTS
TGTPSYGKNPGSRRKKYKASAAASKTSDVNIISDDPTESPDNLPEEPKDLSSEYVIYQPE
QEEEELTGYELDKRLGKPHPFIDPKTKKEIEKPLTSEELWWNWRKPEKEQWSRWQRRRPD
VETVFLKAMAETGQVKLYGDHPTLTETALYRARRHLYKAERLQAEKEKMEKIGPIAYYSE
WVQAWKKDTSREAIQKHFEETGEDENIQLIEMFCHQTDREYRIMMGTDIRIPRDPLAMRM
REDQIKQIWGGDPVYPTINYIQDPDEVIDYRGPDFHEPTPNMLAYLKEHGKIISREELEK
ILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSDAEVEEGDEKITRNWSVLKSNPELR
KSKDKPKKKDMSLEEAVDDSENLTDFLMDFDEDE

Transcript Sequence

Gene sequence data has not been registered.